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PBAL39_18799 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_18799" - RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_18799RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (184 aa)    
Predicted Functional Partners:
PBAL39_18804
Putative anti-sigma factor (339 aa)
 
          0.850
PBAL39_03824
Putative anti-sigma factor (357 aa)
   
          0.744
PBAL39_07695
Putative anti-sigma factor (392 aa)
   
          0.717
PBAL39_22110
Putative anti-sigma factor (322 aa)
   
          0.704
PBAL39_16786
Putative anti-sigma factor (338 aa)
   
          0.704
PBAL39_09406
Putative anti-sigma factor (388 aa)
   
          0.697
PBAL39_12940
Putative anti-sigma factor (396 aa)
   
          0.696
PBAL39_17254
Putative anti-sigma factor (346 aa)
   
          0.695
PBAL39_12378
Putative anti sigma factor (349 aa)
   
          0.693
PBAL39_12383
RNA polymerase ECF-type sigma factor (176 aa)
   
          0.689
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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