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PBAL39_19549 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_19549" - RNA-splicing ligase RtcB in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_19549RNA-splicing ligase RtcB (486 aa)    
Predicted Functional Partners:
PBAL39_12282
Uncharacterized protein (340 aa)
 
          0.748
PBAL39_12252
Uncharacterized protein (353 aa)
 
        0.709
PBAL39_12257
Uncharacterized protein (251 aa)
 
        0.704
PBAL39_12262
Uncharacterized protein (152 aa)
 
   
  0.617
PBAL39_19544
Uncharacterized protein (28 aa)
              0.596
PBAL39_07965
Uncharacterized protein (347 aa)
   
          0.553
PBAL39_23562
Possible ATP-dependent RNA helicase (435 aa)
     
    0.498
PBAL39_21615
Possible ATP-dependent RNA helicase (443 aa)
     
    0.498
PBAL39_14739
Possible ATP-dependent RNA helicase (376 aa)
     
    0.498
PBAL39_12483
Possible ATP-dependent RNA helicase (417 aa)
     
    0.498
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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