STRINGSTRING
PBAL39_20109 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_20109" - Possible regulator of xyl operon in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_20109Possible regulator of xyl operon (186 aa)    
Predicted Functional Partners:
PBAL39_20114
Uncharacterized protein (119 aa)
 
          0.672
PBAL39_12187
Possible TonB-dependent receptor (796 aa)
   
          0.608
PBAL39_19534
HI0933-like protein (145 aa)
   
          0.518
PBAL39_00752
Putative AraC-family regulatory protein (283 aa)
   
          0.503
PBAL39_18959
Putative outer membrane protein (522 aa)
   
          0.466
PBAL39_01217
Transcriptional regulator (258 aa)
   
          0.456
PBAL39_12558
Transcription regulator (293 aa)
   
          0.436
PBAL39_25015
Transcriptional regulator, AraC family protein (271 aa)
   
          0.411
PBAL39_19374
Transcriptional regulator (289 aa)
   
          0.406
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (15%) [HD]