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PBAL39_20204 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_20204" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_20204RNA polymerase ECF-type sigma factor (198 aa)    
Predicted Functional Partners:
PBAL39_22115
RNA polymerase ECF-type sigma factor (187 aa)
   
          0.702
PBAL39_02670
RNA polymerase ECF-type sigma factor (202 aa)
   
          0.654
PBAL39_22255
RNA polymerase sigma-70 factor, ECF subfamily protein (182 aa)
   
          0.635
PBAL39_20199
Putative anti-sigma factor (391 aa)
              0.634
PBAL39_14409
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (207 aa)
   
          0.581
PBAL39_00702
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (197 aa)
   
          0.563
PBAL39_18629
Putative RNA polymerase ECF-type sigma factor (186 aa)
   
          0.533
PBAL39_20314
RNA polymerase ECF-type sigma factor (196 aa)
   
          0.510
PBAL39_21225
Putative RNA polymerase ECF-type sigma factor (195 aa)
   
          0.451
PBAL39_20209
Uncharacterized protein (107 aa)
              0.441
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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