STRINGSTRING
EDM36273.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM36273.1" - Probably involved in nutrient binding in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36273.1Probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport (1187 aa)    
Predicted Functional Partners:
EDM36274.1
annotation not available (502 aa)
 
          0.945
EDM34178.1
annotation not available (450 aa)
   
          0.779
EDM34902.1
annotation not available (477 aa)
   
 
      0.778
EDM36013.1
annotation not available (410 aa)
   
          0.777
EDM36706.1
annotation not available (476 aa)
   
 
      0.772
EDM35378.1
annotation not available (459 aa)
   
          0.762
EDM36498.1
Uncharacterized protein; COG0077 Prephenate dehydratase (502 aa)
   
          0.759
EDM36921.1
Uncharacterized protein; COG0457 FOG- TPR repeat (487 aa)
   
          0.748
EDM35537.1
annotation not available (470 aa)
   
          0.746
EDM37524.1
annotation not available (469 aa)
   
          0.744
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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