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PBAL39_21225 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_21225" - Putative RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_21225Putative RNA polymerase ECF-type sigma factor (195 aa)    
Predicted Functional Partners:
PBAL39_21220
Putative transmembrane sensor/regulatory protein (329 aa)
 
          0.690
PBAL39_22255
RNA polymerase sigma-70 factor, ECF subfamily protein (182 aa)
   
          0.604
PBAL39_21230
Transcriptional regulator (234 aa)
              0.599
PBAL39_23692
Putative RNA polymerase ECF-type sigma factor (194 aa)
   
          0.545
PBAL39_25615
RNA polymerase ECF-type sigma factor (179 aa)
   
          0.486
PBAL39_20204
RNA polymerase ECF-type sigma factor (198 aa)
   
          0.451
PBAL39_21215
Putative outer membrane protein (1151 aa)
              0.445
PBAL39_16504
RNA polymerase ECF-type sigma factor (187 aa)
   
          0.445
PBAL39_21210
Uncharacterized protein (469 aa)
              0.434
PBAL39_21205
Uncharacterized protein (855 aa)
              0.431
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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