STRINGSTRING
PBAL39_21880 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_21880" - Transcriptional regulator in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_21880Transcriptional regulator (101 aa)    
Predicted Functional Partners:
PBAL39_02645
Uncharacterized protein (279 aa)
   
          0.721
PBAL39_06746
Uncharacterized protein (460 aa)
   
          0.684
PBAL39_14384
Uncharacterized protein (458 aa)
   
          0.683
PBAL39_02910
Transcriptional regulator, MarR family protein (316 aa)
   
          0.683
PBAL39_04603
Putative regulatory protein (301 aa)
   
          0.666
PBAL39_06736
Putative outer membrane protein (659 aa)
   
          0.662
PBAL39_00085
Outer membrane receptor ragA protein (602 aa)
   
          0.659
PBAL39_18889
Alpha-mannosidase (879 aa)
   
          0.656
PBAL39_18884
Uncharacterized protein (462 aa)
   
          0.619
PBAL39_21875
Uncharacterized protein (225 aa)
              0.617
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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