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PBAL39_22255 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_22255" - RNA polymerase sigma-70 factor, ECF subfamily protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_22255RNA polymerase sigma-70 factor, ECF subfamily protein (182 aa)    
Predicted Functional Partners:
PBAL39_22260
Uncharacterized protein (29 aa)
              0.649
PBAL39_18709
RNA polymerase ECF-type sigma factor (179 aa)
   
          0.645
PBAL39_20204
RNA polymerase ECF-type sigma factor (198 aa)
   
          0.635
PBAL39_14409
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (207 aa)
   
          0.629
PBAL39_22250
Putative anti-sigma factor (400 aa)
              0.628
PBAL39_21225
Putative RNA polymerase ECF-type sigma factor (195 aa)
   
          0.604
PBAL39_03010
RNA polymerase ECF-type sigma factor (223 aa)
   
          0.556
PBAL39_15089
RNA polymerase ECF-type sigma factor (193 aa)
   
          0.508
PBAL39_02670
RNA polymerase ECF-type sigma factor (202 aa)
   
          0.508
PBAL39_20470
RNA polymerase ECF-type sigma factor (204 aa)
   
          0.483
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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