STRINGSTRING
PBAL39_22320 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_22320" - DNA-directed DNA polymerase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_22320DNA-directed DNA polymerase (1074 aa)    
Predicted Functional Partners:
PBAL39_12007
DNA polymerase I (937 aa)
   
  0.970
PBAL39_22315
Nucleotidyltransferase/DNA polymerase involved in DNA repair (500 aa)
 
   
  0.970
PBAL39_21660
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (374 aa)
     
  0.969
PBAL39_18414
DNA polymerase III, epsilon subunit (456 aa)
   
  0.968
PBAL39_10950
DNA polymerase III gamma/tau subunit (382 aa)
   
  0.962
PBAL39_22310
Uncharacterized protein (251 aa)
 
     
  0.956
PBAL39_07915
DNA polymerase III, tau and gamma subunits (624 aa)
   
  0.950
PBAL39_12568
Uncharacterized protein (341 aa)
     
  0.920
PBAL39_10561
Single-stranded DNA-binding protein (142 aa)
     
 
  0.917
PBAL39_01102
DNA polymerase III epsilon subunit (334 aa)
     
  0.858
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (7%) [HD]