STRINGSTRING
PBAL39_22345 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_22345" - Outer membrane efflux protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_22345Outer membrane efflux protein (457 aa)    
Predicted Functional Partners:
PBAL39_22340
Putative transport related membrane protein (1090 aa)
 
          0.967
PBAL39_22335
Efflux transporter, RND family, MFP subunit (360 aa)
 
          0.933
PBAL39_16399
Transcriptional regulator, MarR family protein (161 aa)
   
          0.740
PBAL39_04548
TraM-like protein (308 aa)
   
          0.739
PBAL39_04563
Uncharacterized protein (212 aa)
   
          0.734
PBAL39_04573
Conserved protein found in conjugate transposon (213 aa)
   
          0.713
PBAL39_04568
Conserved transmembrane protein found in conjugative transposon (393 aa)
   
          0.698
PBAL39_04583
Conjugative transposon protein TraI (220 aa)
   
          0.685
PBAL39_22350
Signaling protein without kinase domain (339 aa)
 
          0.675
PBAL39_07680
Uncharacterized protein (117 aa)
   
          0.622
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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