STRINGSTRING
PBAL39_22907 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_22907" - Putative outer membrane protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_22907Putative outer membrane protein (211 aa)    
Predicted Functional Partners:
PBAL39_22912
Putative anti-sigma factor (386 aa)
 
          0.811
PBAL39_12378
Putative anti sigma factor (349 aa)
   
          0.763
PBAL39_09406
Putative anti-sigma factor (388 aa)
   
          0.739
PBAL39_20199
Putative anti-sigma factor (391 aa)
   
          0.738
PBAL39_24113
Putative anti-sigma factor (387 aa)
   
          0.735
PBAL39_24243
Uncharacterized protein (198 aa)
   
          0.729
PBAL39_12940
Putative anti-sigma factor (396 aa)
   
          0.723
PBAL39_07375
Putative outer membrane protein (525 aa)
   
          0.723
PBAL39_15019
Putative anti-sigma factor (404 aa)
   
          0.721
PBAL39_20354
Putative anti-sigma factor (370 aa)
   
          0.719
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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