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PBAL39_23562 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_23562" - Possible ATP-dependent RNA helicase in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_23562Possible ATP-dependent RNA helicase (435 aa)    
Predicted Functional Partners:
PBAL39_21615
Possible ATP-dependent RNA helicase (443 aa)
   
   
 
0.849
PBAL39_14739
Possible ATP-dependent RNA helicase (376 aa)
   
   
 
0.838
PBAL39_14794
RNA binding protein (107 aa)
   
  0.782
PBAL39_02317
RNA-binding protein (100 aa)
   
  0.782
PBAL39_25390
Cold shock protein (63 aa)
   
  0.778
PBAL39_23002
Cold shock protein (63 aa)
   
  0.778
PBAL39_14274
Cold shock protein (63 aa)
   
  0.778
PBAL39_11592
Cold shock protein (63 aa)
   
  0.778
PBAL39_01347
Stress protein, member of the CspA-family (68 aa)
   
  0.778
rplA
50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (232 aa)
   
  0.766
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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