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PBAL39_23847 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_23847" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_23847RNA polymerase ECF-type sigma factor (189 aa)    
Predicted Functional Partners:
PBAL39_23842
Putative anti-sigma factor (380 aa)
 
          0.699
PBAL39_22917
RNA polymerase ECF-type sigma factor (196 aa)
   
          0.614
PBAL39_01267
Putative anti-sigma factor (320 aa)
   
          0.585
PBAL39_06056
Putative anti-sigma factor (341 aa)
   
          0.577
PBAL39_07695
Putative anti-sigma factor (392 aa)
   
          0.576
PBAL39_18799
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (184 aa)
   
          0.569
PBAL39_24108
RNA polymerase ECF-type sigma factor (203 aa)
   
          0.543
PBAL39_09406
Putative anti-sigma factor (388 aa)
   
          0.526
PBAL39_22110
Putative anti-sigma factor (322 aa)
   
          0.524
PBAL39_09031
Putative anti-sigma factor (332 aa)
   
          0.518
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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