STRINGSTRING
rimO protein (Pedobacter sp. BAL39) - STRING interaction network
"rimO" - Ribosome maturation factor RimO in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
rimORibosome maturation factor RimO ; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 (444 aa)    
Predicted Functional Partners:
ftsY
Signal recognition particle receptor FtsY ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) (320 aa)
   
        0.825
bshC
Putative cysteine ligase BshC (529 aa)
 
          0.759
PBAL39_23882
Probable malate/L-lactate dehydrogenase (362 aa)
              0.681
hemE
Uroporphyrinogen decarboxylase ; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (340 aa)
     
 
  0.640
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (509 aa)
   
        0.601
pnp
Polynucleotide phosphorylase ; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (715 aa)
 
        0.574
PBAL39_23862
Uncharacterized protein (53 aa)
              0.562
dapF
Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (270 aa)
 
        0.560
PBAL39_13552
Protein-export membrane protein SecD/SecF ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (987 aa)
   
   
  0.550
PBAL39_25035
Inosine-5’-monophosphate dehydrogenase (489 aa)
   
        0.544
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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