STRINGSTRING
bshC protein (Pedobacter sp. BAL39) - STRING interaction network
"bshC" - Putative cysteine ligase BshC in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bshCPutative cysteine ligase BshC (529 aa)    
Predicted Functional Partners:
PBAL39_06011
Uncharacterized protein (73 aa)
 
   
  0.863
PBAL39_23882
Probable malate/L-lactate dehydrogenase (362 aa)
              0.835
PBAL39_08836
A-glycosyltransferase-related protein, glycosyltransferase family 4 protein (379 aa)
   
     
  0.779
PBAL39_03949
Uncharacterized protein (136 aa)
   
     
  0.771
rimO
Ribosome maturation factor RimO ; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 (444 aa)
 
          0.759
PBAL39_21475
Uncharacterized protein (342 aa)
   
          0.697
PBAL39_08706
FAD-dependent pyridine nucleotide-disulphide oxidoreductase (324 aa)
   
          0.689
ftsY
Signal recognition particle receptor FtsY ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) (320 aa)
              0.592
PBAL39_07850
Uncharacterized protein (159 aa)
   
          0.587
PBAL39_13250
Uncharacterized protein (813 aa)
 
   
  0.547
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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