STRINGSTRING
dapB protein (Pedobacter sp. BAL39) - STRING interaction network
"dapB" - 4-hydroxy-tetrahydrodipicolinate reductase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapB4-hydroxy-tetrahydrodipicolinate reductase ; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (246 aa)    
Predicted Functional Partners:
dapA
4-hydroxy-tetrahydrodipicolinate synthase ; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (299 aa)
 
 
  0.990
dapD
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (271 aa)
 
 
  0.980
PBAL39_23908
Signal peptidase I (400 aa)
 
          0.954
PBAL39_19295
Aspartokinase (424 aa)
 
 
  0.886
dapF
Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (270 aa)
 
   
  0.856
PBAL39_04683
Bifunctional protein- aspartokinase I homoserine dehydrogenase (815 aa)
 
 
  0.845
PBAL39_17479
Aspartokinase (437 aa)
 
 
  0.837
lysA
Diaminopimelate decarboxylase ; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (384 aa)
 
   
  0.831
PBAL39_18299
Putative aspartate aminotransferase (397 aa)
   
 
  0.766
PBAL39_14484
Aspartate aminotransferase (400 aa)
   
 
  0.766
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (9%) [HD]