STRINGSTRING
PBAL39_23988 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_23988" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_23988Uncharacterized protein (73 aa)    
Predicted Functional Partners:
PBAL39_23983
Cell division protein FtsX (292 aa)
              0.880
PBAL39_11922
Uncharacterized protein (351 aa)
   
          0.708
PBAL39_23993
Undecaprenol kinase (Bacitracin resistance protein) (238 aa)
              0.707
PBAL39_08225
Uncharacterized protein (669 aa)
   
          0.699
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (258 aa)
              0.670
PBAL39_10671
Putative methyltransferase (230 aa)
   
          0.631
PBAL39_24003
Uncharacterized protein (287 aa)
 
          0.620
PBAL39_06226
Uncharacterized protein (271 aa)
   
          0.620
PBAL39_06206
Probable integral outer membrane protein (566 aa)
   
          0.599
PBAL39_01247
Putative cell surface protein (366 aa)
   
          0.578
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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