STRINGSTRING
nth protein (Pedobacter sp. BAL39) - STRING interaction network
"nth" - DNA-(apurinic or apyrimidinic site) lyase in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nthDNA-(apurinic or apyrimidinic site) lyase ; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (220 aa)    
Predicted Functional Partners:
PBAL39_11687
Exodeoxyribonuclease III (256 aa)
 
  0.960
PBAL39_23062
Exodeoxyribonuclease III (Exonuclease III) (260 aa)
 
 
  0.862
recA
Recombinase A ; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (338 aa)
   
 
  0.767
PBAL39_12007
DNA polymerase I (937 aa)
   
 
  0.715
PBAL39_10900
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (716 aa)
 
     
  0.715
PBAL39_23382
Putative hydrolase (275 aa)
 
            0.714
PBAL39_18414
DNA polymerase III, epsilon subunit (456 aa)
   
   
  0.673
PBAL39_24043
Uncharacterized protein (78 aa)
              0.628
pnp
Polynucleotide phosphorylase ; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (715 aa)
 
   
  0.618
PBAL39_20685
DNA polymerase IV, family X (542 aa)
   
 
  0.602
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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