STRINGSTRING
PBAL39_24158 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_24158" - Transcriptional regulator in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_24158Transcriptional regulator (303 aa)    
Predicted Functional Partners:
PBAL39_24163
Short-chain dehydrogenase (271 aa)
              0.794
PBAL39_20840
Transcriptional regulator, AraC family protein (289 aa)
   
          0.669
PBAL39_09116
Transcriptional regulator, AraC family protein (287 aa)
   
          0.635
PBAL39_19534
HI0933-like protein (145 aa)
   
          0.634
PBAL39_12683
Transcriptional regulator, AraC family protein (278 aa)
   
          0.628
PBAL39_24168
Peptidase S41 (743 aa)
              0.474
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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