• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
EDM36552.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM36552.1" - Putative glycoprotease family exported protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36552.1Putative glycoprotease family exported protein; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone (227 aa)    
Predicted Functional Partners:
tsaD
tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family (333 aa)
 
0.962
EDM36351.1
Putative ATPase/GTPase; COG0802 Predicted ATPase or kinase (167 aa)
 
  0.854
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (145 aa)
   
        0.830
EDM36551.1
Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane (76 aa)
              0.783
rpmH
COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (52 aa)
              0.772
EDM35887.1
Uncharacterized protein; COG0009 Putative translation factor (SUA5); Belongs to the SUA5 family (188 aa)
 
 
  0.616
tilS
tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine; Belongs to the tRNA(Ile)-lysidine synthase family (461 aa)
 
   
  0.484
EDM36152.1
COG0009 Putative translation factor (SUA5); Belongs to the SUA5 family (250 aa)
 
 
  0.484
EDM36548.1
Transcriptional regulator, LytR/AlgR family protein; COG3279 Response regulator of the LytR/AlgR family (245 aa)
              0.476
EDM36547.1
Signal transduction histidine kinase, LytS; COG3275 Putative regulator of cell autolysis (309 aa)
              0.476
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
Server load: low (7%) [HD]