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rpmE2 protein (Pedobacter sp. BAL39) - STRING interaction network
"rpmE2" - 50S ribosomal protein L31 type B in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpmE250S ribosomal protein L31 type B (82 aa)    
Predicted Functional Partners:
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (147 aa)
   
  0.973
PBAL39_23852
50S ribosomal protein L28 (67 aa)
 
  0.973
rplQ
50S ribosomal protein L17 (179 aa)
   
  0.973
rpmA
50S ribosomal protein L27 (139 aa)
   
  0.971
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (115 aa)
   
  0.971
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
   
  0.953
rplJ
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (172 aa)
   
  0.951
rplR
50S ribosomal protein L18 ; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (117 aa)
   
  0.950
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (209 aa)
   
  0.947
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (205 aa)
   
  0.946
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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