STRINGSTRING
PBAL39_25000 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_25000" - Putative zinc protease in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_25000Putative zinc protease (424 aa)    
Predicted Functional Partners:
PBAL39_24995
Zinc protease (414 aa)
   
  0.997
PBAL39_15144
Probable oxidoreductase (517 aa)
     
  0.967
atpD
F-ATPase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (501 aa)
     
  0.904
atpA
F-ATPase subunit alpha ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit (524 aa)
     
 
  0.852
PBAL39_11352
Putative zinc protease ymxG (409 aa)
   
  0.845
atpH
F-type ATPase subunit delta ; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (182 aa)
     
 
  0.822
PBAL39_05723
NADH dehydrogenase I chain F (453 aa)
     
 
  0.815
PBAL39_22922
Uncharacterized protein (472 aa)
     
  0.794
PBAL39_22650
Putative nucleoside-diphosphate-sugar epimerase (298 aa)
     
  0.794
PBAL39_15389
Uncharacterized protein (289 aa)
     
  0.794
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (8%) [HD]