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rplU protein (Pedobacter sp. BAL39) - STRING interaction network
"rplU" - 50S ribosomal protein L21 in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplU50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)    
Predicted Functional Partners:
rpmA
50S ribosomal protein L27 (139 aa)
 
  0.999
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (147 aa)
   
  0.998
rplO
50S ribosomal protein L15 ; Binds to the 23S rRNA (148 aa)
 
  0.997
rplB
50S ribosomal protein L2 ; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (274 aa)
     
  0.996
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (205 aa)
     
  0.995
rplV
50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (104 aa)
     
  0.995
rplK
50S ribosomal protein L11 ; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors (147 aa)
     
  0.995
rplX
50S ribosomal protein L24 ; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit (112 aa)
 
  0.995
rplR
50S ribosomal protein L18 ; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (117 aa)
   
  0.994
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (209 aa)
     
  0.994
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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