STRINGSTRING
rnr protein (Pedobacter sp. BAL39) - STRING interaction network
"rnr" - Ribonuclease R in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rnrRibonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (709 aa)    
Predicted Functional Partners:
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (149 aa)
       
  0.889
PBAL39_25125
Geranyltranstransferase (Farnesyl-diphosphate synthase) (322 aa)
   
        0.882
PBAL39_10541
Ribonuclease G (503 aa)
     
  0.862
PBAL39_06901
tRNA nucleotidyltransferase (468 aa)
   
  0.803
PBAL39_18414
DNA polymerase III, epsilon subunit (456 aa)
     
  0.775
PBAL39_20725
ABC-type Fe3+-siderophores transport system (264 aa)
     
      0.768
PBAL39_01647
Putative tRNA-rRNA methyltransferase (255 aa)
 
    0.728
PBAL39_12643
Putative tRNA/rRNA methyltransferase (249 aa)
 
    0.704
rnz
tRNase Z ; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (303 aa)
     
  0.697
PBAL39_02112
Putative SpoU rRNA methylase family protein (219 aa)
 
    0.694
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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