• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
EDM36640.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM36640.1" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36640.1Uncharacterized protein; COG1197 Transcription-repair coupling factor (superfamily II helicase) (280 aa)    
Predicted Functional Partners:
EDM37884.1
annotation not available (158 aa)
   
          0.540
EDM38895.1
Uncharacterized protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins) (144 aa)
   
          0.526
EDM36639.1
Fatty acid hydroxylase; COG3000 Sterol desaturase (222 aa)
 
          0.474
EDM36325.1
TM2 domain family protein; COG2314 Predicted membrane protein (119 aa)
   
          0.472
EDM35728.1
annotation not available (142 aa)
   
          0.440
EDM36949.1
COG3184 Uncharacterized protein conserved in bacteria (149 aa)
   
          0.424
EDM35148.1
COG4775 Outer membrane protein/protective antigen OMA87 (437 aa)
   
          0.415
EDM36546.1
annotation not available (251 aa)
   
          0.404
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
Server load: low (12%) [HD]