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EDM36663.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM36663.1" - COG4775 Outer membrane protein/protective antigen OMA87 in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36663.1COG4775 Outer membrane protein/protective antigen OMA87 (839 aa)    
Predicted Functional Partners:
EDM36787.1
COG4339 Uncharacterized protein conserved in bacteria (404 aa)
 
          0.797
EDM36784.1
annotation not available (786 aa)
 
          0.785
EDM34559.1
Uncharacterized protein; COG1418 Predicted HD superfamily hydrolase (201 aa)
   
          0.742
EDM36689.1
COG2357 Uncharacterized protein conserved in bacteria (767 aa)
 
          0.737
EDM36785.1
annotation not available (260 aa)
 
          0.692
EDM36664.1
COG1278 Cold shock proteins (63 aa)
              0.573
EDM36289.1
COG5651 PPE-repeat proteins (7799 aa)
   
 
  0.572
EDM38229.1
Lipopolysaccharide biosynthesis; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis (720 aa)
 
 
 
  0.566
nuoC
NADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family (167 aa)
   
      0.518
EDM38215.1
OmpA/MotB; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family (448 aa)
   
 
  0.508
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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