STRINGSTRING
ku protein (Pedobacter sp. BAL39) - STRING interaction network
"ku" - Non-homologous end joining protein Ku in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kuNon-homologous end joining protein Ku ; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (254 aa)    
Predicted Functional Partners:
PBAL39_16896
ATP-dependent DNA ligase (908 aa)
 
   
  0.924
PBAL39_25555
Response regulator (139 aa)
   
        0.752
PBAL39_25550
Multi-sensor Signal Transduction Histidine Kinase (737 aa)
   
        0.751
PBAL39_18274
DNA ligase (530 aa)
 
   
  0.606
PBAL39_12453
DNA topoisomerase IB (355 aa)
 
          0.581
PBAL39_25565
Uncharacterized protein (415 aa)
              0.554
PBAL39_25540
Maltooligosyl trehalose trehalohydrolase (619 aa)
 
        0.553
PBAL39_25545
Disproportionating enzyme (1344 aa)
   
        0.488
PBAL39_00380
Lipoprotein, putative (245 aa)
   
          0.482
PBAL39_25535
Glycogen operon protein GlgX homolog (714 aa)
              0.480
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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