STRINGSTRING
PBAL39_25590 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_25590" - Cytochrome-c peroxidase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_25590Cytochrome-c peroxidase (376 aa)    
Predicted Functional Partners:
PBAL39_25595
Uncharacterized protein (204 aa)
              0.856
PBAL39_25600
Putative outer membrane receptor protein (476 aa)
              0.729
PBAL39_25605
Uncharacterized protein (1095 aa)
              0.715
PBAL39_25610
Putative transmembrane sensor/regulatory protein (335 aa)
              0.709
PBAL39_25585
B-glycosidase, glycoside hydrolase family 16 protein (294 aa)
              0.506
PBAL39_25615
RNA polymerase ECF-type sigma factor (179 aa)
              0.484
PBAL39_15484
Uncharacterized protein (284 aa)
 
          0.435
PBAL39_13552
Protein-export membrane protein SecD/SecF ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (987 aa)
         
  0.430
PBAL39_04658
Methionine synthase (1219 aa)
           
  0.430
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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