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PBAL39_25610 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_25610" - Putative transmembrane sensor/regulatory protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_25610Putative transmembrane sensor/regulatory protein (335 aa)    
Predicted Functional Partners:
PBAL39_19449
Putative ECF-type RNA polymerase sigma factor (190 aa)
 
 
  0.866
PBAL39_25605
Uncharacterized protein (1095 aa)
              0.859
PBAL39_25600
Putative outer membrane receptor protein (476 aa)
 
          0.856
PBAL39_18709
RNA polymerase ECF-type sigma factor (179 aa)
 
 
  0.841
PBAL39_22115
RNA polymerase ECF-type sigma factor (187 aa)
 
 
  0.827
PBAL39_14019
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (181 aa)
 
 
  0.805
PBAL39_12383
RNA polymerase ECF-type sigma factor (176 aa)
 
 
  0.750
PBAL39_14409
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (207 aa)
 
          0.715
PBAL39_07310
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (183 aa)
 
 
  0.714
PBAL39_20470
RNA polymerase ECF-type sigma factor (204 aa)
 
 
  0.714
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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