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PBAL39_25615 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_25615" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_25615RNA polymerase ECF-type sigma factor (179 aa)    
Predicted Functional Partners:
PBAL39_25610
Putative transmembrane sensor/regulatory protein (335 aa)
 
          0.668
PBAL39_25600
Putative outer membrane receptor protein (476 aa)
 
          0.643
PBAL39_03474
RNA polymerase ECF-type sigma factor (200 aa)
   
          0.597
PBAL39_07195
Uncharacterized protein (397 aa)
   
          0.584
PBAL39_25605
Uncharacterized protein (1095 aa)
              0.575
PBAL39_25620
Uncharacterized protein (97 aa)
              0.572
PBAL39_07210
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (194 aa)
   
          0.568
PBAL39_17279
Putative RNA polymerase sigma factor (188 aa)
   
          0.565
PBAL39_22907
Putative outer membrane protein (211 aa)
   
          0.551
PBAL39_10761
Uncharacterized protein (547 aa)
   
          0.502
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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