STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP70600.1Hypothetical protein. (335 aa)    
Predicted Functional Partners:
EDP71216.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
  
 0.998
EDP71217.1
COG0587 DNA polymerase III, alpha subunit.
  
 0.998
EDP70114.1
DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.990
dnaX
DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
 
 0.988
EDP69530.1
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; COG2812 DNA polymerase III, gamma/tau subunits.
  
 
 0.986
EDP69867.1
COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
 
  
 0.810
EDP70351.1
COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
 
 0.804
EDP70599.1
Hypothetical protein.
 
     0.775
EDP70598.1
B-glycosyltransferase, glycosyltransferase family 2 protein; COG1216 Predicted glycosyltransferases.
 
     0.761
ligA
Putative DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
     
 0.666
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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