STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFO92812.1Putative ornithine cyclodeaminase/mu-crystallin family protein. (306 aa)    
Predicted Functional Partners:
AFO92811.1
Haloacid dehalogenase-like protein.
       0.857
arcA
Arginase ArcA; Belongs to the arginase family.
 
 
 0.758
AFO92810.1
Putative integral membrane protein.
       0.747
fghA
S-formylglutathione hydrolase FghA; Serine hydrolase involved in the detoxification of formaldehyde.
       0.721
AFO92809.1
Hypothetical protein; Belongs to the UPF0178 family.
       0.721
arcB
Ornithine cyclodeaminase ArcB.
  
     0.711
AFO92806.1
Putative membrane transport protein.
 
     0.639
AFO90244.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
   
 0.604
AFO92808.1
Putative soluble pyridine nucleotide transhydrogenase.
       0.535
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.481
Your Current Organism:
Phaeobacter inhibens
NCBI taxonomy Id: 391619
Other names: P. inhibens DSM 17395, Phaeobacter gallaeciensis DSM 17395, Phaeobacter inhibens DSM 17395
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