STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM79328.1COG0477 Permeases of the major facilitator superfamily. (395 aa)    
Predicted Functional Partners:
EDM81763.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.682
EDM80369.1
Non-ribosomal peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.630
EDM80050.1
Chorismate mutase/prephenate dehydratase; COG1605 Chorismate mutase.
   
 
 0.559
EDM79329.1
Hypothetical protein.
       0.536
EDM79327.1
COG0457 FOG: TPR repeat.
       0.531
EDM75334.1
COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.517
EDM74891.1
COG0287 Prephenate dehydrogenase.
  
 
 0.513
EDM80636.1
Thiamine pyrophosphate enzyme-like TPP binding protein; COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; Belongs to the TPP enzyme family.
     
 0.512
EDM77501.1
Hypothetical protein; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
   
 
  0.496
EDM74737.1
Hypothetical protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
  
     0.470
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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