STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM76609.1COG0295 Cytidine deaminase. (297 aa)    
Predicted Functional Partners:
EDM77594.1
COG2820 Uridine phosphorylase.
 
 
 0.884
EDM78748.1
COG0572 Uridine kinase.
    
 0.880
tdk
COG1435 Thymidine kinase.
 
  
 0.832
EDM80538.1
COG0402 Cytosine deaminase and related metal-dependent hydrolases.
    
 0.773
EDM80540.1
Hypothetical protein; COG2374 Predicted extracellular nuclease.
    
 0.773
EDM79057.1
Stationary-phase survival protein SurE; COG0496 Predicted acid phosphatase.
  
  
 0.758
EDM77335.1
COG0457 FOG: TPR repeat.
    
 0.755
EDM75219.1
COG0005 Purine nucleoside phosphorylase.
  
 
 0.727
EDM73765.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
  
 
 0.692
EDM78844.1
Putative atp /gtp binding protein; COG0699 Predicted GTPases (dynamin-related).
 
    0.678
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.