STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_0630PFAM: protein of unknown function UPF0102; KEGG: rfr:Rfer_3873 protein of unknown function UPF0102; Belongs to the UPF0102 family. (144 aa)    
Predicted Functional Partners:
Veis_0629
KEGG: rfr:Rfer_3874 phosphoheptose isomerase.
  
  
 0.743
Veis_3316
Mg chelatase, subunit ChlI; KEGG: rfr:Rfer_0471 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
  
 0.691
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
     0.690
Veis_0628
PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: rfr:Rfer_3875 transport-associated.
     
 0.680
Veis_4084
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rfr:Rfer_3862 DNA processing protein DprA, putative.
 
    0.510
Veis_0632
PFAM: glycosyl transferase, family 2; Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_B0044 glycosyl transferase, family 2.
   
   0.431
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
     0.427
Veis_4459
PFAM: peptidase M22, glycoprotease; KEGG: rfr:Rfer_0189 peptidase M22, glycoprotease.
 
     0.416
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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