STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhmDMandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR). (422 aa)    
Predicted Functional Partners:
Veis_0638
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mlo:mll5243 3-oxoacyl-(acyl carrier protein) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.927
Veis_2709
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_2836 mandelate racemase/muconate lactonizing enzyme.
  
  
0.924
Veis_0637
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_1492 major facilitator superfamily MFS_1.
 
  
 0.568
Veis_3773
PFAM: KDPG and KHG aldolase; KEGG: rso:RSc2752 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase.
 
   
 0.424
Veis_3778
KEGG: rso:RSc2759 probable 2-dehydro-3-deoxygalactonokinase protein.
 
  
 0.401
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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