STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_1531Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rde:RD1_3716 gluconolactonase, putative. (310 aa)    
Predicted Functional Partners:
Veis_3148
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rpa:RPA3624 possible gluconolactonase precursor.
  
  
 
0.919
Veis_2069
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.907
Veis_1598
PFAM: glucose-methanol-choline oxidoreductase; KEGG: rme:Rmet_2503 glucose-methanol-choline oxidoreductase.
  
 
 0.906
Veis_1597
KEGG: bxe:Bxe_C0229 hypothetical protein.
     
 0.904
Veis_1530
PFAM: Malate/L-lactate dehydrogenase; KEGG: pol:Bpro_3968 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.779
Veis_1532
KEGG: pfo:Pfl_3710 hypothetical protein.
       0.613
Veis_1536
KEGG: atc:AGR_L_1638 putative simple sugar transport system substrate-binding protein.
 
     0.607
Veis_1534
PFAM: inner-membrane translocator; KEGG: sme:SMa0198 putative ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.539
Veis_1533
PFAM: inner-membrane translocator; KEGG: mlo:mll4201 ribose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 
     0.515
Veis_1535
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll4203 sugar ABC transporter, ATP-binding protein.
 
   
 0.508
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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