STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_2454PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro02424 multidrug resistance transporter, MFS superfamily. (510 aa)    
Predicted Functional Partners:
Veis_3963
PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_B0774 arabinose efflux permease.
  
   
 0.630
Veis_2453
Hypothetical protein.
       0.546
Veis_2830
PFAM: amino acid permease-associated region; KEGG: bte:BTH_I0764 amino acid permease.
  
   
 0.504
Veis_1550
PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1077 general substrate transporter:major facilitator superfamily MFS_1.
  
   
 0.463
Veis_2435
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Non-ribosomal peptide synthetase; KR; KEGG: psp:PSPPH_2899 yersiniabactin polyketide/non-ribosomal peptide synthetase.
  
  
 0.424
Veis_0110
PFAM: glutamine synthetase, catalytic region; KEGG: pol:Bpro_4698 glutamine synthetase, catalytic region.
 
   
 0.405
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.