STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_2478PFAM: O-antigen polymerase; KEGG: msu:MS0243 RfaL protein. (415 aa)    
Predicted Functional Partners:
Veis_2558
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.921
Veis_2479
PFAM: glycosyl transferase, group 1; KEGG: bth:BT2148 glycosyltransferase.
 
  
 0.864
Veis_2477
PFAM: glycosyl transferase, family 2; KEGG: bte:BTH_I0991 lipopolysaccharide core biosynthesis glycosyltransferase.
  
  
 0.831
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
     
 0.808
Veis_2476
KEGG: pol:Bpro_0204 hypothetical protein.
       0.802
Veis_0632
PFAM: glycosyl transferase, family 2; Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_B0044 glycosyl transferase, family 2.
 
  
 0.781
Veis_2474
KEGG: pol:Bpro_0202 hypothetical protein.
       0.657
Veis_4862
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tbd:Tbd_1871 putative epimerase/dehydratase polysaccharide-related biosynthesis protein.
  
  
 0.556
Veis_2823
KEGG: rfr:Rfer_2661 putative transmembrane protein.
 
     0.554
Veis_3055
PFAM: sugar transferase; KEGG: sth:STH2716 sugar transferase involved in lipopolysaccharide synthesis.
  
  
 0.542
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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