STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_2466D-arabino-3-hexulose 6-phosphate formaldehyde lyase. (211 aa)    
Predicted Functional Partners:
LP43_2467
6-phospho-3-hexuloisomerase.
 
 0.999
LP43_2463
D-arabino-3-hexulose 6-phosphate formaldehyde lyase.
 
  
 
0.919
rpiA-2
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
 
  
 0.918
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.905
LP43_0728
Arabinose 5-phosphate isomerase.
  
 
 0.738
LP43_2377
Hypothetical protein.
  
     0.593
LP43_1519
Hypothetical protein.
  
     0.512
LP43_1126
Oxidoreductase.
  
    0.486
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
     
 0.482
LP43_1493
Hypothetical protein.
  
     0.471
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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