STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0813PFAM: Aldehyde Dehydrogenase; KEGG: vha:VIBHAR_05501 hypothetical protein. (482 aa)    
Predicted Functional Partners:
Swoo_2824
PFAM: Aldehyde Dehydrogenase; KEGG: sse:Ssed_1760 aldehyde dehydrogenase.
  
  
 
0.905
Swoo_0814
PFAM: peptidase M19 renal dipeptidase; KEGG: vha:VIBHAR_05502 hypothetical protein.
 
     0.850
Swoo_0816
KEGG: vha:VIBHAR_05507 hypothetical protein.
 
     0.710
Swoo_0817
KEGG: pin:Ping_2124 hypothetical protein.
 
   
 0.685
Swoo_0812
PFAM: Endoribonuclease L-PSP; KEGG: pcr:Pcryo_1816 endoribonuclease L-PSP.
   
   0.651
Swoo_0811
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_05499 transcriptional regulator.
 
     0.587
Swoo_0815
PFAM: BCCT transporter; KEGG: pin:Ping_2126 BCCT transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
     
 0.532
Swoo_2724
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_1864 integral membrane sensor hybrid histidine kinase.
  
 
 0.504
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.503
Swoo_1221
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin).
  
  
 0.419
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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