STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_1995PFAM: glycosyl transferase family 2; KEGG: pmc:P9515_14031 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Swoo_1994
KEGG: pmc:P9515_14041 hypothetical protein.
 
     0.881
Swoo_1996
KEGG: pmc:P9515_14021 hypothetical protein.
 
 
 0.860
Swoo_1993
PFAM: phosphoribulokinase/uridine kinase; KEGG: pmc:P9515_14051 hypothetical protein.
 
     0.818
Swoo_1992
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmc:P9515_14061 hypothetical protein.
 
     0.811
Swoo_4250
PFAM: glycosyl transferase family 39; KEGG: sse:Ssed_0714 hypothetical protein.
 
  
 0.747
Swoo_1997
PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO4804 conserved hypothetical protein; putative aldolase/epimerase (AraD-like).
       0.696
Swoo_1694
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sse:Ssed_2951 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF.
 
  
 0.549
Swoo_1670
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: vvy:VV0363 pilin glycosylation protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.508
Swoo_1664
PFAM: sugar transferase; KEGG: sdn:Sden_2648 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.488
Swoo_1586
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sse:Ssed_3098 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.432
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.