STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2513TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA3427 hypothetical protein. (682 aa)    
Predicted Functional Partners:
Swoo_2525
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: vch:VCA0111 hypothetical protein.
 
  
 0.951
Swoo_2529
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: vch:VCA0107 hypothetical protein.
 
  
 0.942
Swoo_2512
PFAM: PAAR repeat-containing protein; KEGG: eca:ECA3426 putative phospholipase.
     0.939
Swoo_2528
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: vco:VC0395_0030 hypothetical protein.
 
  
 0.919
Swoo_2514
TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: aha:AHA_1826 hemolysin co-regulated protein.
 
  
 0.918
Swoo_2521
KEGG: vco:VC0395_0022 hypothetical protein.
 
  
 0.913
Swoo_2527
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: vch:VCA0109 hypothetical protein.
 
  
 0.899
Swoo_2516
TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein.
 
  
 0.893
Swoo_2523
KEGG: plu:plu0366 hypothetical protein.
 
  
 0.892
Swoo_2526
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: mmw:Mmwyl1_1199 protein of unknown function DUF879.
 
  
 0.890
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.