STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ58064.1Transcriptional regulator, LysR family. (298 aa)    
Predicted Functional Partners:
SFQ06351.1
Transcriptional regulator, LysR family.
  
     0.724
SFQ06193.1
Transcriptional regulator, LysR family.
  
     0.717
SFQ75806.1
DNA-binding transcriptional regulator, LysR family.
  
     0.711
SFQ02330.1
Transcriptional regulator, LysR family.
  
     0.701
SFQ73755.1
Transcriptional regulator, LysR family.
  
     0.698
SFQ67952.1
DNA-binding transcriptional regulator, LysR family.
  
     0.687
SFQ57779.1
DNA-binding transcriptional regulator, LysR family.
  
     0.679
SFQ02799.1
DNA-binding transcriptional regulator, LysR family.
  
     0.647
SFQ51322.1
Transcriptional regulator, LysR family.
  
     0.642
SFQ72263.1
DNA-binding transcriptional regulator, LysR family.
  
     0.613
Your Current Organism:
Donghicola eburneus
NCBI taxonomy Id: 393278
Other names: D. eburneus, DSM 29127, Donghicola eburneus Yoon et al. 2007, JCM 13604, KCTC 12735, strain SW-277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.