STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YE3494AUncharacterized protein; Similar to Salmonella typhi hypothetical protein Sty4559 SWALL:Q8Z1K5 (EMBL:AL627282) (183 aa) fasta scores: E(): 1.5e-42, 58.65 38d in 179 aa (182 aa)    
Predicted Functional Partners:
YE3495
Putative membrane protein; Similar to Salmonella typhi putative exported protein Sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 4e-47, 51.82 38d in 247 aa and to Xanthomonas axonopodis hypothetical protein Xac2255 xac2255 SWALL:Q8PKC0 (EMBL:AE011862) (254 aa) fasta scores: E(): 3.6e-25, 37.75 38d in 241 aa
    0.973
YE3494
Uncharacterized protein; Similar to Salmonella typhi hypothetical protein Sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 2.7e-23, 46.42 38d in 168 aa
 
     0.960
YE3509
Uncharacterized protein; Similar in parts to Salmonella typhi hypothetical protein Sty4534 SWALL:Q8Z1L5 (EMBL:AL627282) (149 aa) fasta scores: E(): 1.2e-35, 62.23 38d in 143 aa and to Xylella fastidiosa hypothetical protein Xf1761 SWALL:Q9PCL7 (EMBL:AE003998) (375 aa) fasta scores: E(): 2.1e-10, 34.78 38d in 138 aa
    0.937
YE3506
Putative type IV pilus operon lipoprotein; Similar to Salmonella dublin, and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 7e-34, 44.33 38d in 406 aa and to Shigella sonnei lipoprotein PilL SWALL:Q9R2J1 (EMBL:AB021078) (355 aa) fasta scores: E(): 9.2e-19, 33.12 38d in 320 aa
  
 0.917
YE3493
TraG-family protein; Similar to Salmonella typhi hypothetical protein Sty4562 SWALL:Q8Z1K2 (EMBL:AL627282) (696 aa) fasta scores: E(): 2.1e-205, 72.19 38d in 694 aa and to Pseudomonas putida hypothetical 80.3 kDa protein SWALL:Q8VMJ3 (EMBL:AJ344068) (718 aa) fasta scores: E(): 2.7e-167, 61.37 38d in 699 aa. Also weakly similar to several putative plasmid-related CDS: Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 2.7e-29, 26.24 38d in 682 aa
 
  
 0.914
YE3492
Similar to Salmonella typhi putative membrane protein Sty4563 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 5.3e-51, 52.38 38d in 252 aa and to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 7.1e-32, 40.75 38d in 238 aa
 
    0.907
YE3482
Uncharacterized protein; Similar to Salmonella typhi hypothetical protein Sty4573 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 1.7e-214, 66.5 38d in 806 aa, and to Xanthomonas axonopodis hypothetical protein Xac2274 xac2274 SWALL:Q8PKA1 (EMBL:AE011864) (897 aa) fasta scores: E(): 2.9e-143, 52.44 38d in 900 aa
 
   
 0.822
YE3486
Putative membrane protein; Similar to Salmonella typhi possible exported protein Sty4568 SWALL:Q8Z1J7 (EMBL:AL627282) (217 aa) fasta scores: E(): 1.6e-64, 66.82 38d in 214 aa
 
    0.815
YE3485
Putative exported protein; Similar to Salmonella typhi hypothetical protein Sty4569 SWALL:Q8Z1J6 (EMBL:AL627282) (299 aa) fasta scores: E(): 1.8e-54, 58.36 38d in 269 aa and to Pseudomonas putida hypothetical 31.9 kDa protein SWALL:Q8VMJ1 (EMBL:AJ344068) (302 aa) fasta scores: E(): 1e-40, 47.9 38d in 263 aa
 
    0.812
YE3467
Putative exported protein; Similar to Salmonella typhi hypothetical protein Sty4576 SWALL:Q8Z1I9 (EMBL:AL627282) (322 aa) fasta scores: E(): 1.9e-86, 63.72 38d in 317 aa
 
    0.807
Your Current Organism:
Yersinia enterocolitica 8081
NCBI taxonomy Id: 393305
Other names: Y. enterocolitica subsp. enterocolitica 8081, Yersinia enterocolitica 8081, Yersinia enterocolitica subsp. enterocolitica 8081, Yersinia enterocolitica subsp. enterocolitica str. 8081, Yersinia enterocolitica subsp. enterocolitica strain 8081
Server load: low (7%) [HD]