STRINGSTRING
nopX protein (Sinorhizobium fredii NGR234) - STRING interaction network
"nopX" - Nodulation outer protein X in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nopXNodulation outer protein X; nolX; NGR234_457 (596 aa)    
Predicted Functional Partners:
rhcJ
Nodulation protein NolT; nolT; NGR234_460 (289 aa)
 
     
  0.915
rhcC1
Nodulation protein NolW; nolW; NGR234_458 (234 aa)
 
     
  0.889
rhcL
Nodulation protein NolV; nolV; NGR234_462 (208 aa)
 
     
  0.829
nopM
Probable E3 ubiquitin-protein ligase NGR_a03640; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is an E3 ubiquitin ligase that interferes with host’s ubiquitination pathway (By similarity) (546 aa)
   
     
  0.824
rhcN
Probable ATP synthase y4yI; Could be involved in the secretion of an unknown factor. Probable catalytic subunit of the translocase (451 aa)
 
     
  0.810
rhcQ
Probable translocation protein Y4yK; Could be involved in the secretion of an unknown factor (358 aa)
 
     
  0.805
rhcT
Probable translocation protein y4yN; Could be involved in the secretion of an unknown factor (272 aa)
 
     
  0.789
rhcS
Probable translocation protein y4yM; Could be involved in the secretion of an unknown factor (91 aa)
 
     
  0.788
nopB
Nodulation protein NolB; nolB; NGR234_459 (164 aa)
         
  0.756
nopL
Nodulation outer protein L; Putative symbiotic effector that modulates nodulation in legumes. When delivered into the plant cell, modulates the activity of signal transduction pathways that culminate in activation of PR proteins (338 aa)
         
  0.749
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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