STRINGSTRING
NGR_a01820 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_a01820" - Putative integrase/recombinase y4rE in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_a01820Putative integrase/recombinase y4rE; y4rE; NGR234_328; Belongs to the ’phage’ integrase family (310 aa)    
Predicted Functional Partners:
NGR_a01830
Putative integrase/recombinase y4rD; Seems to be non-functional (281 aa)
          0.969
NGR_a01810
Putative integrase/recombinase y4rF; y4rF; NGR234_329; Belongs to the ’phage’ integrase family (425 aa)
       
0.899
NGR_a01860
Putative integrase/recombinase y4rA; y4rA; NGR234_324; Belongs to the ’phage’ integrase family (409 aa)
   
  0.820
NGR_a03610
Putative integrase/recombinase y4gC; y4gC; NGR234_118; Belongs to the ’phage’ integrase family (192 aa)
   
  0.809
xerC
annotation not available (310 aa)
   
  0.769
NGR_a03870
Putative integrase/recombinase y4eF; Similar to y4qK; y4eF; NGR234_86; Belongs to the ’phage’ integrase family (251 aa)
 
   
  0.764
NGR_a01870
Putative integrase/recombinase y4qK; May function as an integrase (308 aa)
 
   
  0.752
RNGR00387
annotation not available (286 aa)
 
   
  0.705
ACP25427.1
annotation not available (286 aa)
 
   
  0.705
NGR_a01800
Uncharacterized protein y4rG; y4rG; NGR234_330; Belongs to the transposase 8 family (135 aa)
         
  0.469
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
Server load: low (6%) [HD]