STRINGSTRING
NGR_a03900 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_a03900" - Uncharacterized protein y4eC in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_a03900Uncharacterized protein y4eC; y4eC; NGR234_82 (307 aa)    
Predicted Functional Partners:
traG
Probable conjugal transfer protein TraG; traG; NGR234_75 (640 aa)
 
        0.764
trbI
Probable conjugal transfer protein TrbI; trbI; NGR234_59 (431 aa)
 
          0.760
traF
Probable conjugal transfer protein TraF; Involved in conjugal transfer of the plasmid (188 aa)
 
          0.752
NGR_a03910
Uncharacterized protein y4eB; y4eB; NGR234_80 (104 aa)
 
          0.726
trbEa
Probable conjugal transfer protein TrbE part 1; trbEa; NGR234_51; Belongs to the TrbE/VirB4 family (149 aa)
 
          0.716
trbEb
Probable conjugal transfer protein TrbE part 2; trbEb; NGR234_52; Belongs to the TrbE/VirB4 family (662 aa)
 
          0.711
trbF
Probable conjugal transfer protein TrbF; trbF; NGR234_56 (220 aa)
 
          0.706
trbG
Probable conjugal transfer protein TrbG; trbG; NGR234_57 (270 aa)
 
          0.699
trbC
Probable conjugal transfer protein TrbC; trbC; NGR234_49 (127 aa)
 
          0.695
trbL
Probable conjugal transfer protein TrbL; trbL; NGR234_55 (391 aa)
 
          0.647
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
Server load: low (13%) [HD]