STRINGSTRING
traF protein (Sinorhizobium fredii NGR234) - STRING interaction network
"traF" - Probable conjugal transfer protein TraF in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traFProbable conjugal transfer protein TraF; Involved in conjugal transfer of the plasmid (188 aa)    
Predicted Functional Partners:
traB
Probable conjugal transfer protein TraB; Enhances conjugal transfer of the plasmid (387 aa)
 
     
  0.973
traA
Probable conjugal transfer protein TraA; traA; NGR234_72; Belongs to the MobA/MobL family (1102 aa)
 
     
  0.973
traH
Uncharacterized protein y4dP; y4dP; NGR234_69; To A.tumefaciens Ti plasmid conjugal transfer region I ORFR2 and ORFR3 (200 aa)
 
     
  0.952
traG
Probable conjugal transfer protein TraG; traG; NGR234_75 (640 aa)
 
     
  0.897
traC
Probable conjugal transfer protein TraC; traC; NGR234_73; To A.tumefaciens Ti plasmid TraC (102 aa)
 
     
  0.878
traD
Probable conjugal transfer protein TraD; traD; NGR234_74; Belongs to the TraD family (71 aa)
 
     
  0.878
trbC
Probable conjugal transfer protein TrbC; trbC; NGR234_49 (127 aa)
 
     
  0.822
trbF
Probable conjugal transfer protein TrbF; trbF; NGR234_56 (220 aa)
 
          0.821
trbI
Probable conjugal transfer protein TrbI; trbI; NGR234_59 (431 aa)
 
          0.821
trbD
Probable conjugal transfer protein TrbD; trbD; NGR234_50 (99 aa)
 
     
  0.821
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
Server load: low (15%) [HD]