STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsBPutative kinase Y4dM; y4dM; NGR234_66; Belongs to the HipA Ser/Thr kinase family (409 aa)    
Predicted Functional Partners:
spsA
Uncharacterized HTH-type transcriptional regulator y4dL; y4dL; NGR234_65
 
     0.966
spsC
Uncharacterized HTH-type transcriptional regulator y4mF; y4mF; NGR234_237
 
 
 
 0.691
NGR_a00710
Uncharacterized protein y4yB; y4yB; NGR234_456
  
    0.572
NGR_c32970
annotation not available
   
 
 0.565
NGR_a00740
Uncharacterized protein y4xO; y4xO; NGR234_453
  
     0.564
NGR_a00350
Uncharacterized HTH-type transcriptional regulator y4aM; Similar to y4wC; y4aM; NGR234_13
   
 
 0.559
NGR_a01020
Uncharacterized HTH-type transcriptional regulator y4wC; Similar to y4aM; y4wC; NGR234_424
   
 
 0.559
NGR_c00470
annotation not available
   
 
 0.559
NGR_c03270
annotation not available
   
 
 0.559
NGR_c12290
annotation not available
   
 
 0.559
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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